WP2 - Virome shifts and molecular epidemiology modelling

Lead beneficiary: UF


To develop novel bioinformatics models, methods and tools for fast epidemic tracing or phylogenetic and phylodynamic inference, allowing the use of large sets of fully- and partially assembled NGS virus data (objective 2).


WP2 exploits mapped, typed and assembled NGS data. The goal of the methods developed in WP2 is to characterize NGS viromes (Task 1), compare NGS data with Sanger taxonomies (Task 2 to 3), and enable epidemiological analysis of large-scale integrated (NGS and Sanger) data sets (Task 4).