VIROGENESIS logo

WP2 - Virome shifts and molecular epidemiology modelling

Lead beneficiary: UF

Objectives:

To develop novel bioinformatics models, methods and tools for fast epidemic tracing or phylogenetic and phylodynamic inference, allowing the use of large sets of fully- and partially assembled NGS virus data (objective 2).

Summary:

WP2 exploits mapped, typed and assembled NGS data. The goal of the methods developed in WP2 is to characterize NGS viromes (Task 1), compare NGS data with Sanger taxonomies (Task 2 to 3), and enable epidemiological analysis of large-scale integrated (NGS and Sanger) data sets (Task 4).